Epstein–Barr Virus in Clinical Practice: What Practitioners Miss…

by | Jan 15, 2026 | Autoimmune, Epstein Barr, Functional Medicine, Uncategorized

Epstein–Barr virus (EBV) is one of the most common viral infections worldwide. By adulthood, over 90% of the population has been exposed. And because of that, EBV is often dismissed as clinically irrelevant — reduced to a footnote in a lab report that simply confirms past infection.

In many cases, that interpretation is appropriate.

But in clinical practice, particularly when working with chronic, relapsing, post-viral, or autoimmune presentations, EBV has a habit of reappearing — not as an acute infection, but as a signal of immune dysregulation.

The challenge for practitioners is not determining whether EBV is present.
It is deciding when EBV actually matters.

EBV Is a Herpesvirus, and That Changes Everything

One of the most important (and frequently overlooked) facts about EBV is that it belongs to the herpesvirus family.

Unlike viruses such as influenza, which are cleared after an acute infection, herpesviruses establish lifelong latency within the host. EBV primarily infects B lymphocytes and persists in a dormant state, kept in check by effective immune surveillance, particularly cytotoxic CD8 T cells and interferon-mediated responses.

In a healthy, well-regulated immune system, this relationship is largely uneventful.

Problems arise not because EBV is “caught again,” but because the immune system loses the capacity to maintain control. Under conditions of physiological stress, immune exhaustion, inflammation, or impaired immune tolerance, EBV may reactivate intermittently, contributing to chronic or relapsing symptoms.

Only about 30%, of the 50% of people with EBV who contract it as a teen or adult, experience acute symptoms at time of initial infection (Glandular fever / Mononucleosis). And Reactivation / chronic EBV can present in a myriad of subtle, persistent and ambiguous ways. 

EBV “Necessary but Insufficient” in Autoimmune Disease?

In recent years, the conversation around Epstein–Barr virus and autoimmunity has focused significantly, particularly in relation to diseases such as systemic lupus erythematosus (SLE) and multiple sclerosis (MS).

Epidemiological and mechanistic studies have shown significant associations between EBV infection and the development of these conditions. In some cohorts, EBV exposure appears to precede disease onset in nearly all cases, leading to the increasingly cited phrase that EBV may be “the cause or the trigger” for autoimmune disease (And the hope that a vaccine for EBV would wipe these autoimmune disease out). 

But I would say to you that EBV is not the cause, instead it is “necessary but not sufficient” for the development of certain autoimmune diseases.

This framing is important.

“Necessary” does not mean causal in isolation. It does not mean EBV alone triggers autoimmunity, nor does it suggest that everyone with EBV will develop autoimmune disease. Clearly, the vast majority do not. Instead, it reflects the idea that EBV may be one required ingredient within a much larger and more complex process.

From a clinical perspective, this distinction matters.

Autoimmune disease does not arise from a single exposure, pathogen, or trigger. It emerges at the intersection of:

  • Genetic susceptibility
  • Immune regulation and tolerance
  • Environmental and infectious exposures
  • Hormonal, metabolic, and stress-related influences

EBV may act as a persistent immune stressor within this landscape (influencing B cell behaviour, immune signalling, molecular mimicry, or loss of immune tolerance), but only in individuals whose immune systems are already vulnerable or dysregulated.

In other words, EBV may be present at the table, but it does not act alone.

This is why a purely pathogen-focused narrative is ultimately unhelpful in clinical practice. Even in conditions where EBV appears to be a consistent upstream factor, it is immune context, regulation, and resilience that determine whether disease develops.

For practitioners, this reinforces an essential principle:
EBV should be understood as part of a multi-factorial immune story, not as a singular cause to target or eradicate.

When EBV Becomes Clinically Relevant

Because EBV infects the majority of the population, a positive antibody test alone does not indicate pathology. Most people coexist with EBV without issue for their entire lives.

In practice, EBV becomes more clinically relevant when it appears within specific patterns or contexts, rather than as an isolated finding.

These contexts may include:

  • Persistent or relapsing fatigue following a viral illness
  • Symptoms that flare with physical, emotional, or physiological stress
  • Multi-system presentations involving immune, neurological, endocrine, or musculoskeletal symptoms
  • A history of poor recovery from infections or frequent immune challenges
  • Autoimmune or post-viral conditions where immune tolerance appears compromised
  • Citrullinated EBV antibodies in functional tests
  • Blood chemistry patterns suggestive of immune imbalance rather than acute infection

In these situations, EBV should not be viewed as the cause of illness. Rather, it may act as a driver or amplifier within a broader picture of immune dysregulation.

Recognising these patterns helps practitioners decide when EBV findings warrant further consideration — and when they are unlikely to be clinically meaningful.

Why EBV Testing Alone Creates Confusion

One of the most common sources of frustration for practitioners is EBV testing.

Standard panels frequently report EBV IgG positivity, which is then interpreted as evidence of past exposure with no current relevance. In other cases, borderline or ambiguous results raise more questions than answers, leading to uncertainty about whether EBV should be addressed at all.

Many panels do not include all the markers necessary for a comprehensive EBV evaluation, or that might be relevant for reactivation years after initial infection. 

Additionally –  EBV laboratory markers cannot be interpreted in isolation. Even if they are clearly positive, we still need to ask WHY. 

Without understanding immune context, including immune capacity, inflammatory load, stress physiology, and overall terrain, EBV results can easily be over-interpreted or dismissed entirely. Neither approach serves the client well.

Testing can provide useful information, but only when integrated into a wider clinical picture that considers why immune control may be compromised in the first place.

EBV Is an Immune Story, Not a Viral Load Story

In clinical practice, EBV is best understood not as an enemy to eradicate, but as a reflection of immune regulation.

Loss of effective immune surveillance — particularly impaired cytotoxic T cell activity — allows EBV to persist in a more active state. Inflammatory signalling, metabolic stress, hormonal shifts, and cumulative physiological burden all influence this process.

From this perspective, EBV does not exist in isolation. It interacts continuously with immune balance, stress responses, metabolic health, and tissue resilience.

This is why protocol-driven approaches that focus solely on “treating the virus” so often fall short. Without addressing the underlying immune terrain, symptom relief is frequently incomplete or temporary.

A Practitioner’s Takeaway

EBV is common.

EBV positivity is not inherently pathological.

But EBV patterns can be clinically meaningful when interpreted in context.

For practitioners, the first step is not treatment; it is recognition. Understanding when EBV matters, and when it does not, prevents unnecessary intervention while allowing more informed, strategic clinical decision-making.

“Even in conditions where EBV appears to be a necessary upstream factor, it is immune regulation (not viral presence alone) that determines clinical outcomes.”

Want to Go Deeper?

If EBV keeps appearing in your cases, or you feel unclear how to confidently navigate persistent EBV reactivation (particularly alongside chronic fatigue, post-viral illness, or autoimmunity) learning to recognise meaningful patterns is essential.

Download the EBV Practitioner Guide to explore how EBV behaves within the immune system, when it becomes relevant, and how to approach it through an immune-first lens.

Sources

1. Multiple Sclerosis – prospective, causal-strength evidence

Bjørnevik K, Cortese M, Healy BC, et al. Longitudinal analysis reveals high prevalence of Epstein–Barr virus associated with multiple sclerosis. Science. 2022;375(6578):296–301. doi:10.1126/science.abj8222.

Why this matters:
This landmark prospective cohort study of >10 million individuals demonstrated that EBV seroconversion preceded the development of MS in nearly all cases, providing the strongest evidence to date for EBV as a necessary but insufficient factor in MS pathogenesis.


2. Systemic Lupus Erythematosus – genetic & mechanistic link

Harley JB, Chen X, Pujato M, et al. Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity. Nature Genetics. 2018;50(5):699–707. doi:10.1038/s41588-018-0102-3.

Why this matters:
This study demonstrated that EBV nuclear antigen 2 (EBNA2) binds to multiple genetic risk loci associated with lupus and other autoimmune diseases, providing a mechanistic explanation for how EBV interacts with genetic susceptibility to promote loss of immune tolerance.


3. Molecular mimicry – direct immune cross-reactivity

Lanz TV, Brewer RC, Ho PP, et al. Clonally expanded B cells in multiple sclerosis bind EBV EBNA1 and GlialCAM. Nature. 2022;603(7900):321–327. doi:10.1038/s41586-022-04432-7.

Why this matters:
This paper provides direct evidence of molecular mimicry, showing that immune responses targeting EBV EBNA1 can cross-react with central nervous system antigens, supporting EBV’s role as an immune trigger rather than a standalone cause.

Robyn Puglia
FdSc DipION IFMCP
mIFM mBANT FellowION

As a Clinical Nutritionist, IFM Certified Functional Medicine Practitioner, and educator with over 20 years of experience in autoimmunity and complex chronic illness, I’ve helped thousands of patients untangle autoimmune disease and mentored hundreds of practitioners through the clinical gray areas where protocols fall short and testing gets complicated. If you’re a practitioner seeking stronger clinical skills, I’m here to help you move forward with clarity and confidence.

Learn More →

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